Publications

Explore the collection of published articles spanning biotechnology research and applications.

Predicting outcomes in esophageal adenocarcinoma following neoadjuvant chemoradiation: Interactions between tumor response and survival

J Thorac Cardiovasc Surg, Vol. S0022-5223, Issue 23, Pages 01091-01097, 2023
PMID: 37967764
The prognostic value of tumor regression scores (TRS) in patients with esophageal adenocarcinoma (EAC) who underwent neoadjuvant chemoradiation remains unclear. We sought to investigate the prognostic value of pathologic and metabolic treatment response among EAC patients undergoing neoadjuvant chemoradiation. Patients with pathologic complete response had prolonged OS, whereas no difference in survival was detected among other TRS categories. At initial staging, the presence of signet ring cells and greater SUV uptake at regional lymph nodes predicted residual disease at pathology and shorter OS, suggesting the need for new treatment strategies for these patients.

Diagnostic exome identifies a novel PRKG2 mutation in a proband with skeletal dysplasia.

Clinical Genetics, December 2023
This graphic abstract combines pedigree, dysmorphology features, radiographs, and the PRKG2 protein domain, specifically the CNB-A regulatory domain, which harbors a mutation resulting in premature protein termination.

Neonatal Ichthyosis and sclerosing cholangitis (NISCH) syndrome with a novel Claudin-1 (CLDN1) mutation: A report from India

Indian Journal of Dermatology, Venereology and Leprology, August 2023
Mutations in the Claudin-1 (CLDN1, Gene ID: 9076) gene are known to result in the autosomal-recessive neonatal ichthyosis-sclerosing cholangitis (NISCH) syndrome (OMIM: 607626).1 The long-term prognosis depends on the severity of the liver disease, which is partly dependent on the mutation present.2 Other ichthyoses with neonatal cholestasis include arthrogryposis-renal dysfunction-cholestasis (ARC) syndrome, type 2 Gaucher’s disease, and MEDNIK syndrome (mental retardation, enteropathy, deafness, neuropathy, ichthyosis and keratodermia).3

The Genetic Drivers of Juvenile, Young, and Early-Onset Parkinson’s Disease in India

Movement Disorders, Nov 28, 2023
Recent studies have advanced our understanding of the genetic drivers of Parkinson’s disease (PD). Rare variants in more than 20 genes are considered causal for PD, and the latest PD genome-wide association study (GWAS) identified 90 independent risk loci. However, there remains a gap in our understanding of PD genetics outside of the European populations in which the vast majority of these studies were focused.

Clinical Utility of Proband Only Clinical Exome Sequencing in Neurodevelopmental Disorders

Indian J Pediatr, Nov 9, 2023
PMID: 37943464
Chromosomal microarray is recommended as the first line of investigation in neurodevelopmental disorders (NDDs). However, advances in next-generation sequencing have unraveled more than 900 genes associated with NDDs, thus improving the genetic diagnosis. Therefore, this study was conducted to explore the utility of clinical exome sequencing (CES) in NDDs from a tertiary care centre in India.

Kindler syndrome with a novel mutation and a rare gynaecological complication

Clinical and Experimental Dermatology, llad364, 2023
PMID: 37878805

Identification of a shared, common haplotype segregating with an SGCB c.544 T > G mutation in Indian patients affected with sarcoglycanopathy

Nature Scientific reports, Vol. 13, Issue 1, Pages 15095, 2023
PMID: 37699968
Sarcoglycanopathy is the most frequent form of autosomal recessive limb- girdle muscular dystrophies caused by mutations in SGCB gene encoding beta-sarcoglycan proteins. In this study, we describe a shared, common haplotype co-segregating in 14 sarcoglycanopathy cases from 13 unrelated families from south Indian region with the likely pathogenic homozygous mutation c.544 T > G (p.Thr182Pro) in SGCB.

Intervention of next-generation sequencing in diagnosis of Alzheimer’s disease: challenges and future prospects

Dementia & neuropsychologia, Vol. 17, Pages e20220025, 2023
PMID: 37577182
Clinical diagnosis of several neurodegenerative disorders based on clinical phenotype is challenging due to its heterogeneous nature and overlapping disease manifestations. Therefore, the identification of underlying genetic mechanisms is of paramount importance for better diagnosis and therapeutic regimens.

Novel homozygous leptin receptor mutation in an infant with monogenic obesity

Pediatric endocrinology, diabetes, and metabolism, Vol. 29, Issue 2, Pages 118-123, 2023
PMID: 37728464
Monogenic obesity can be caused by a mutation in one of the single genes involved in hunger and satiety. The most common mutations affect melanocortin 4 (MC4) followed by the leptin gene and its receptor. Leptin receptor (LEPR) gene mutation is an extremely rare endocrine disease characterized by early-onset obesity, hyperphagia in addition to pituitary hormone deficiency, and metabolic abnormalities.

Ancient gene linkages support ctenophores as sister to other animals

Nature, Vol. 618, Issue 7963, Pages 110-117, 2023
PMID: 37198475
A central question in evolutionary biology is whether sponges or ctenophores are the sister group to all other animals, with implications for the evolution of neural systems. Traditional phylogenetic methods, including morphological and gene sequence analysis, have not resolved this debate. Using chromosome-scale gene linkage (synteny), this study presents new genomes for ctenophores, sponges, and unicellular animal relatives. The analysis shows that ctenophores share ancestral syntenic patterns with unicellular eukaryotes, while sponges, bilaterians, and cnidarians share derived chromosomal rearrangements. These findings provide a new framework for resolving deep, recalcitrant phylogenetic problems and have implications for our understanding of animal evolution.